PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S05079.20
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family C3H
Protein Properties Length: 658aa    MW: 73899.5 Da    PI: 6.9854
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S05079.20genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.82.9e-063153291226
                    TS--TTTTT-SS-SS CS
        zf-CCCH  12 tGtCkyGdrCkFaHg 26 
                    +G C++G++C+F H+
  Jcr4S05079.20 315 SGSCPRGEKCHFLHD 329
                    69************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd073808.06E-387226No hitNo description
PROSITE profilePS5010313.319304331IPR000571Zinc finger, CCCH-type
SMARTSM003560.0046305330IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.4E-7307331IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.46E-6307333IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.784335363IPR000571Zinc finger, CCCH-type
SMARTSM003560.019337362IPR000571Zinc finger, CCCH-type
PfamPF046779.4E-38378494IPR006768Cwf19-like, C-terminal domain-1
Gene3DG3DSA:3.30.428.104.6E-5379479IPR011146HIT-like domain
SuperFamilySSF541977.65E-7385459IPR011146HIT-like domain
PfamPF046761.4E-16539622IPR006767Cwf19-like protein, C-terminal domain-2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005829Cellular Componentcytosol
GO:0003824Molecular Functioncatalytic activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 658 aa     Download sequence    Send to blast
MAPPRILLCG DVLGRLNQLY KRVQSVNKSA GPFDALFCVG QFFPGSPELL EEFMDYVEGR  60
SQIPLPTYFI GDYGIAAPKV LAAASRNSAN LGFKMDGLKV CENLFWLRGS GKFTLHGGLS  120
VTYLSGRQSP DSQQFGIYSQ DDVDALRALA EEPGIVDFGV TNRASISDIP AGVSDSVGSD  180
STISELVAEI KPRYHVAGTK GVFYAREPYS NTDALHITRF LGLASVGNKD KQKFIHAISP  240
TPGSMMTAAE ISTKPSNTTL SPYTFVEQTA LLKEITKRPS DNVSDSQYWR YDVSQKRQKT  300
GTVDGDKLCF KFVYSGSCPR GEKCHFLHDM DARQQYLRGV CIDFLMKGKC ERGPDCSFKH  360
TFQNEGESYS HRRRGSENSN ANRSKECWFC LSSPSVESHL IISIGENYYC ALAKGPLVQD  420
HVLLIPVEHS PNTVSLPEEC ESELVEFRNS LKLYYKNQGK EAVLFEWVSK RGTHANLQVA  480
PVPSSRAAVI QDIFNMAAEK LGFKFVIMKX LSAPYLLRKF QIGHLEERFS ACSSSQHLID  540
GRKWLRTQFD RNHSFFYVEL PDGTVLLHSV DENEKFPAQF GREVLAGLLN KPERADWRAC  600
TLSKEEEMKM VEEFKKQFGE LDPNRVPPFQ CWDTELSFNG RISSLTTTQD DHHYFMVV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ6555992e-98JQ655599.1 Hevea brasiliensis microsatellite HB 41 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012076939.10.0PREDICTED: zinc finger CCCH domain-containing protein 64
RefseqXP_012076940.10.0PREDICTED: zinc finger CCCH domain-containing protein 64
SwissprotQ84WU90.0C3H64_ARATH; Zinc finger CCCH domain-containing protein 64
TrEMBLA0A067KFS40.0A0A067KFS4_JATCU; Uncharacterized protein
STRINGPOPTR_0006s15670.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71321923